DoMD
Manual:
Preface and Disclaimer
Introduction
Installation Guide
Running the Examples
Component of Code
Wrapped functions
Input Configuration and File Format
S-CGFG Algorithm
Force Field Assignment
Custom Force Field Construction
Tutorials:
Linear Polymer (examples/pi)
Brush Polymer (examples/spes_brush)
Crosslinked Networks (examples/spes_network)
Lipid Membranes & Protein-Loaded NPs (examples/aunps)
Core-Shell Nanoparticles (examples/core_shell_nps)
API Reference:
domd_cgbuilder package
domd_database package
domd_forcefield package
domd_topology package
domd_xyz package
misc package
Subpackages
misc.io package
Submodules
misc.io.assemble module
misc.io.gmx_reader module
misc.io.gmx_writer module
misc.io.xml_reader module
misc.io.xml_writer module
Module contents
Submodules
misc.aa_molecule module
misc.cg_system module
misc.draw module
misc.logger module
Module contents
DoMD
misc package
misc.io package
View page source
misc.io package
Submodules
misc.io.assemble module
misc.io.gmx_reader module
misc.io.gmx_writer module
misc.io.xml_reader module
misc.io.xml_writer module
Module contents