DoMD
Manual:
Preface and Disclaimer
Introduction
Installation Guide
Running the Examples
Component of Code
Wrapped functions
Input Configuration and File Format
S-CGFG Algorithm
Force Field Assignment
Custom Force Field Construction
Tutorials:
Linear Polymer (examples/pi)
Brush Polymer (examples/spes_brush)
Crosslinked Networks (examples/spes_network)
Lipid Membranes & Protein-Loaded NPs (examples/aunps)
Core-Shell Nanoparticles (examples/core_shell_nps)
API Reference:
domd_cgbuilder package
domd_database package
domd_forcefield package
domd_topology package
domd_xyz package
misc package
DoMD
Index
Index
D
|
M
D
domd_cgbuilder
module
domd_cgbuilder.HSP_predictor
module
domd_cgbuilder.HSP_predictor.models
module
domd_database
module
domd_forcefield.oplsaa
module
domd_forcefield.oplsaa.ml_functions
module
M
module
domd_cgbuilder
domd_cgbuilder.HSP_predictor
domd_cgbuilder.HSP_predictor.models
domd_database
domd_forcefield.oplsaa
domd_forcefield.oplsaa.ml_functions